Resources of sequence bioinformatics exercises

Genome browsers and sequence resources
UCSC genome browser
NCBI Entrez
Ensembl

Sequence analysis

Translation utility
Multiple alignments
Webcutter

NCBI blast
FASTA at EBI

Pfam
Rfam
SMART

EMBOSS portals
bio.lundberg EMBOSS portal

Proteomics
   
Scanprosite
   
PSI-blast (select PSI-blast as algorithm)

PORTAL MOBYLE (hmmsearch)

Phylogeny
Gene prediction
    Genscan
    Repeatmasker
   
Wise2 / Genewise.
    Spidey

Statistical genetics Downloadable windows Software


Affymetrix Tiling Array Tools
Genetics software: Merlin
http://bio.biomedicine.gu.se/~tore/program/clustalx-2.0.10-win.msi
http://bio.biomedicine.gu.se/~tore/program/Cn3D-4.1.msi
http://bio.biomedicine.gu.se/~tore/program/jalview_install.exe
http://bio.biomedicine.gu.se/~tore/program/njplotWin95.exe
http://bio.biomedicine.gu.se/~tore/program/treeview_instal.exe
http://bio.biomedicine.gu.se/~tore/program/ViewerLite50_4cas.exe
http://bio.biomedicine.gu.se/~tore/program/BioEdit.zip
http://bio.biomedicine.gu.se/~tore/program/phylip-3.68.exe

Simplot
Mega4
ssh and xwindows server
ssh
http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe

xming
http://sourceforge.net/projects/xming/files/Xming/6.9.0.31/Xming-6-9-0-31-setup.exe/download

xming setup file